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Hasegawa Co Ltd mega version 6.0
Mega Version 6.0, supplied by Hasegawa Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mega+6%2E0/mega+version+6+0/pm38992085-196-27-31
Average 90 stars, based on 1 article reviews
mega version 6.0 - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Recent population expansion of longtail tuna Thunnus tonggol (Bleeker, 1851) inferred from the mitochondrial DNA markers
Article Snippet: The best nucleotide substitution models with the lowest BIC score (Bayesian Information Criterion) for the D-loop and ND5 sequences were Tamura 3-parameter (T92) ( ) and Hasegawa–Kishino–Yano with Gamma distribution and invariant sites (HKY+G+1), respectively, as identified in MEGA 6.0.

Article Title: Symbiosis of the millipede parasitic nematodes Rhigonematoidea and Thelastomatoidea with evolutionary different origins
Article Snippet: Phylogenetic trees of the Rhigonematomorpha and Thelastomatoidea were constructed from evolutionary distances by the maximum likelihood (ML) method using Mega 6.0 software [ ] and the Hasegawa-Kishino-Yano model [ ].

Article Title: Complete genomic characterization of a reassortment isolate of Sophora yellow stunt virus from Sophora alopecuroides in China
Article Snippet: Sophora alopecuroides is an important shrub widely distributed in arid and semi-arid regions of Asia.. Recently, S. alopecuroides plants with symptoms of severe stunting, yellowing and small sized leaves were observed in Wuhai, Inner Mongolia, of China.. In this work, the infection of Sophora yellow stunt virus (SYSV), a virus belonging to the genus Nanovirus, was confirmed by next-generation sequencing of small RNAs.

Article Title: Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa
Article Snippet: The Hasegawa-Kishino-Yano (HKY) nucleotide substitution model with a gamma distribution of among-site rate variation (HKY + Γ) was selected as the best-fit model by Modeltest in MEGA 6.0 and used in Maximum Likelihood phylogeny construction with 1000 bootstrap replicates (in PhyML3.0) and the Bayesian Markov chain Monte Carlo (BMCMC) tree inference (in BEAST vl.8.2 package ( http://tree.bio.ed.ac.uk/software/BEAST ) ( Drummond and Rambaut, 2007 ).

Article Title: Characterization of GII.4 noroviruses circulating among children with acute gastroenteritis in Pune, India: 2005-2013.
Article Snippet: Contents lists available at ScienceDirect Infection, Genetics and Evolution j ourna l homepage: www.e lsev ie r .com/ locate /meeg id Research paper Characterization of GII.4 noroviruses circulating among children with acute gastroenteritis in Pune, India: 2005–2013 Ruta Kulkarni a, Amit Patel a, Shilpa Bhalla a, Preeti Chhabra a,1, Sarah Cherian b, Shobha D. Chitambar a,⁎ a Enteric Viruses Group, National Institute of Virology, Pune, India b Bioinformatics Group, National Institute of Virology, Pune, India ⁎ Corresponding author at: Enteric Viruses Group, Nati Dr. Ambedkar Road, Pune 411 001, India.. E-mail address: drshobha.niv@gmail.com (S.D.. Chitam 1 Present address: Gastroenteritis & Respiratory Virus Disease Control and Prevention, 1600 Clifton Road, Atlan America. http://dx.doi.org/10.1016/j.meegid.2015.11.016 1567-1348/© 2015 Elsevier B.V. All rights reserved. a b s t r a c t a r t i c l e i n f o Article history: Received 7 June 2015 Received in revised form 9 November 2015 Accepted 17 November 2015 Available online 27 November 2015 Keywords: Gastroenteritis GII.4 norovirus Variant VP1 Epitope India Genogroup II genotype 4 noroviruses (GII.4 NoVs), an important cause of sporadic childhood gastroenteritis worldwide, undergo continuous evolution leading to the periodic emergence of novel variants.

Software:

Article Title: Recent population expansion of longtail tuna Thunnus tonggol (Bleeker, 1851) inferred from the mitochondrial DNA markers
Article Snippet: The best nucleotide substitution models with the lowest BIC score (Bayesian Information Criterion) for the D-loop and ND5 sequences were Tamura 3-parameter (T92) ( ) and Hasegawa–Kishino–Yano with Gamma distribution and invariant sites (HKY+G+1), respectively, as identified in MEGA 6.0.

Article Title: Symbiosis of the millipede parasitic nematodes Rhigonematoidea and Thelastomatoidea with evolutionary different origins
Article Snippet: Phylogenetic trees of the Rhigonematomorpha and Thelastomatoidea were constructed from evolutionary distances by the maximum likelihood (ML) method using Mega 6.0 software [ ] and the Hasegawa-Kishino-Yano model [ ].

Article Title: Complete genomic characterization of a reassortment isolate of Sophora yellow stunt virus from Sophora alopecuroides in China
Article Snippet: Sophora alopecuroides is an important shrub widely distributed in arid and semi-arid regions of Asia.. Recently, S. alopecuroides plants with symptoms of severe stunting, yellowing and small sized leaves were observed in Wuhai, Inner Mongolia, of China.. In this work, the infection of Sophora yellow stunt virus (SYSV), a virus belonging to the genus Nanovirus, was confirmed by next-generation sequencing of small RNAs.

Article Title: Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa
Article Snippet: The Hasegawa-Kishino-Yano (HKY) nucleotide substitution model with a gamma distribution of among-site rate variation (HKY + Γ) was selected as the best-fit model by Modeltest in MEGA 6.0 and used in Maximum Likelihood phylogeny construction with 1000 bootstrap replicates (in PhyML3.0) and the Bayesian Markov chain Monte Carlo (BMCMC) tree inference (in BEAST vl.8.2 package ( http://tree.bio.ed.ac.uk/software/BEAST ) ( Drummond and Rambaut, 2007 ).

Article Title: Characterization of GII.4 noroviruses circulating among children with acute gastroenteritis in Pune, India: 2005-2013.
Article Snippet: Contents lists available at ScienceDirect Infection, Genetics and Evolution j ourna l homepage: www.e lsev ie r .com/ locate /meeg id Research paper Characterization of GII.4 noroviruses circulating among children with acute gastroenteritis in Pune, India: 2005–2013 Ruta Kulkarni a, Amit Patel a, Shilpa Bhalla a, Preeti Chhabra a,1, Sarah Cherian b, Shobha D. Chitambar a,⁎ a Enteric Viruses Group, National Institute of Virology, Pune, India b Bioinformatics Group, National Institute of Virology, Pune, India ⁎ Corresponding author at: Enteric Viruses Group, Nati Dr. Ambedkar Road, Pune 411 001, India.. E-mail address: drshobha.niv@gmail.com (S.D.. Chitam 1 Present address: Gastroenteritis & Respiratory Virus Disease Control and Prevention, 1600 Clifton Road, Atlan America. http://dx.doi.org/10.1016/j.meegid.2015.11.016 1567-1348/© 2015 Elsevier B.V. All rights reserved. a b s t r a c t a r t i c l e i n f o Article history: Received 7 June 2015 Received in revised form 9 November 2015 Accepted 17 November 2015 Available online 27 November 2015 Keywords: Gastroenteritis GII.4 norovirus Variant VP1 Epitope India Genogroup II genotype 4 noroviruses (GII.4 NoVs), an important cause of sporadic childhood gastroenteritis worldwide, undergo continuous evolution leading to the periodic emergence of novel variants.



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